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ASM1210295v1

Organism name:
Lactobacillus mulieris (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB9245
BioSample:
SAMN14478500
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2020/04/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_012102955.1 (latest)
RefSeq assembly accession:
GCF_012102955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAAVSE01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
405x
Sequencing technology:
Illumina NextSeq

IDs: 6633531 [UID] 18477938 [GenBank] 18542918 [RefSeq]

See Genome Information for Lactobacillus mulieris

There are 69 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/01/2020 14:35:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,708
CDSs (total)::1,646
Genes (coding)::1,600
CDSs (with protein)::1,600
Genes (RNA)::62
rRNAs::3, 2, 1 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 23S)
partial rRNAs::2 (16S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::46
CDSs (without protein)::46
Pseudo Genes (ambiguous residues)::0 of 46
Pseudo Genes (frameshifted)::18 of 46
Pseudo Genes (incomplete)::26 of 46
Pseudo Genes (internal stop)::7 of 46
Pseudo Genes (multiple problems)::5 of 46
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,723,383
Total ungapped length1,723,383
Number of contigs52
Contig N5066,175
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,723,383521,723,38366,17500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus mulierisLactobacillus mulieris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007095465.1Lactobacillus mulieristype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007095465.1Lactobacillus mulieristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7188.4991.79
Best-match type99.7188.4991.79

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna