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ASM1205138v1

Organism name:: Salmonella enterica subsp. enterica serovar Typhimurium (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ST101
BioSample:: SAMN14450166
BioProject:: PRJNA615288
Submitter:: University of Maryland
Date:: 2020/04/06
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_012051385.1 (latest)
RefSeq assembly accession:: GCF_012051385.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. 0.4.8
Expected final version:: yes
Genome coverage:: 19x
Sequencing technology:: Illumina MiSeq; Oxford Nanopore MiniION

IDs: 6602131 [UID] 18420588 [GenBank] 18543218 [RefSeq]

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 526504 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_012051385.1	=	GCF_012051385.1	ASM1205138v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::12/13/2023 04:24:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,212
CDSs (total)::5,089
Genes (coding)::4,921
CDSs (with protein)::4,921
Genes (RNA)::123
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::87
ncRNAs::15
Pseudo Genes (total)::168
CDSs (without protein)::168
Pseudo Genes (ambiguous residues)::0 of 168
Pseudo Genes (frameshifted)::56 of 168
Pseudo Genes (incomplete)::126 of 168
Pseudo Genes (internal stop)::22 of 168
Pseudo Genes (multiple problems)::34 of 168
Pseudo Genes (short protein)::1 of 168
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,225,110
Total ungapped length	5,225,110
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP050731.1	=	NZ_CP050731.1
Plasmid pST101-1	CP050732.1	=	NZ_CP050732.1
Plasmid pST101-2	CP050733.1	=	NZ_CP050733.1

Molecule	Total Length
All	5,225,110
Chromosome	5,038,546
Plasmid pST101-1	181,971
Plasmid pST101-2	4,593

	ANI	Query coverage	Subject coverage
Declared type	99.90	89.89	96.45
Best-match type	99.90	89.89	96.45

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ASM1205138v1

See Genome Information for Salmonella enterica

Pathogen Detection Resources

There are 526504 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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