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ASM1194723v1

Organism name:
Planosporangium mesophilum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TBRC 2212
BioSample:
SAMN14450469
BioProject:
PRJNA615299
Submitter:
King Mongkut's Institute of Technology Ladkrabang
Date:
2020/04/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_011947235.1 (latest)
RefSeq assembly accession:
GCF_011947235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAATVX01
Assembly method:
SPAdes v. 3.1
Expected final version:
yes
Genome coverage:
96x
Sequencing technology:
Illumina MiSeq

IDs: 6551241 [UID] 18315198 [GenBank] 18659448 [RefSeq]

See Genome Information for Planosporangium mesophilum

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/28/2020 02:39:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,179
CDSs (total)::6,127
Genes (coding)::5,960
CDSs (with protein)::5,960
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::167
CDSs (without protein)::167
Pseudo Genes (ambiguous residues)::0 of 167
Pseudo Genes (frameshifted)::44 of 167
Pseudo Genes (incomplete)::129 of 167
Pseudo Genes (internal stop)::7 of 167
Pseudo Genes (multiple problems)::13 of 167
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,649,555
Total ungapped length6,649,555
Number of contigs86
Contig N50204,945
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)86

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,649,555866,649,555204,94500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Planosporangium mesophilumPlanosporangium mesophilum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016863255.1Planosporangium mesophilumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016863255.1Planosporangium mesophilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.5999.95
Best-match type99.9999.5999.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna