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ASM1160413v1

Organism name:
Proteus mirabilis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: XH1565
BioSample:
SAMN14363863
BioProject:
PRJNA612157
Submitter:
Zhejiang University
Date:
2020/03/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_011604135.1 (latest)
RefSeq assembly accession:
GCF_011604135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAAOMW01
Assembly method:
shovill v. 0.9.0
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
Illumina HiSeq

IDs: 6383971 [UID] 17947698 [GenBank] 17955948 [RefSeq]

See Genome Information for Proteus mirabilis

There are 3626 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/15/2020 14:55:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,918
CDSs (total)::3,800
Genes (coding)::3,704
CDSs (with protein)::3,704
Genes (RNA)::118
rRNAs::10, 4, 21 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::8, 3, 21 (5S, 16S, 23S)
tRNAs::79
ncRNAs::4
Pseudo Genes (total)::96
CDSs (without protein)::96
Pseudo Genes (ambiguous residues)::0 of 96
Pseudo Genes (frameshifted)::33 of 96
Pseudo Genes (incomplete)::59 of 96
Pseudo Genes (internal stop)::23 of 96
Pseudo Genes (multiple problems)::17 of 96
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,078,455
Total ungapped length4,078,455
Number of contigs132
Contig N50194,745
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)132

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,078,4551324,078,455194,74500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Proteus mirabilisProteus mirabilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000160755.1Proteus mirabilis ATCC 29906type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000160755.1Proteus mirabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3390.4892.83
Best-match type99.3390.4892.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna