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ASM1132003v1

Organism name:
Pseudomonas otitidis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 13M
BioSample:
SAMN14323027
BioProject:
PRJNA610893
Submitter:
Universidad Nacional Autonoma de Mexico
Date:
2020/03/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_011320035.1 (latest)
RefSeq assembly accession:
GCF_011320035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAANPR01
Assembly method:
SPAdes v. 3.10
Expected final version:
yes
Genome coverage:
35.6x
Sequencing technology:
Illumina MiSeq

IDs: 6233641 [UID] 17651848 [GenBank] 17728648 [RefSeq]

See Genome Information for Pseudomonas otitidis

There are 36 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length6,479,270
Total ungapped length6,352,696
Gaps between scaffolds0
Number of scaffolds787
Scaffold N5025,766
Scaffold L5075
Number of contigs1,096
Contig N5010,479
Contig L50176
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)787

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,479,2707876,352,69625,7663090

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas otitidisPseudomonas otitidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900111835.1Pseudomonas otitidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900111835.1Pseudomonas otitidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.6577.7877.91
Best-match type95.6577.7877.91

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna