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ASM1110046v1

Organism name:
Jeotgalibaca arthritidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CECT 9157
BioSample:
SAMN14260637
BioProject:
PRJNA609845
Submitter:
KyungHee University
Date:
2020/03/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_011100465.1 (latest)
RefSeq assembly accession:
GCF_011100465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
497.54x
Sequencing technology:
PacBio RSII

IDs: 6117401 [UID] 17408338 [GenBank] 17949528 [RefSeq]

See Genome Information for Jeotgalibaca arthritidis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/22/2023 00:31:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,355
CDSs (total)::2,262
Genes (coding)::2,202
CDSs (with protein)::2,202
Genes (RNA)::93
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::70
ncRNAs::4
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::11 of 60
Pseudo Genes (incomplete)::43 of 60
Pseudo Genes (internal stop)::14 of 60
Pseudo Genes (multiple problems)::7 of 60
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,348,096
Total ungapped length2,348,096
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_011100475.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP049740.1=NZ_CP049740.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,348,096

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Jeotgalibaca arthritidisJeotgalibaca arthritidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003955755.1Jeotgalibaca ciconiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.6419.7015.68

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected