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Ash1.7

Organism name:
Homo sapiens (human)
Isolate:
NA24385
Sex:
male
BioSample:
SAMN03283347
BioProject:
PRJNA607914
Submitter:
Johns Hopkins University
Date:
2020/03/04
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_011064465.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAAKGM01
Assembly method:
MaSuRCA v. 3.1.1
Expected final version:
no
Genome coverage:
123.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore MinION; PacBio Sequel

IDs: 6098421 [UID] 17349708 [GenBank]

See Genome Information for Homo sapiens

There are 1094 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,109,313,318
Total ungapped length3,026,434,059
Gaps between scaffolds0
Number of scaffolds971
Scaffold N50145,105,607
Scaffold L509
Number of contigs2,412
Contig N5034,306,965
Contig L5027
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)971

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_011064475.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM021568.1n/an/a0
Chromosome 2CM021569.1n/an/a0
Chromosome 3CM021570.1n/an/a0
Chromosome 4CM021571.1n/an/a0
Chromosome 5CM021572.1n/an/a0
Chromosome 6CM021573.1n/an/a0
Chromosome 7CM021574.1n/an/a0
Chromosome 8CM021575.1n/an/a0
Chromosome 9CM021576.1n/an/a0
Chromosome 10CM021577.1n/an/a0
Chromosome 11CM021578.1n/an/a0
Chromosome 12CM021579.1n/an/a0
Chromosome 13CM021580.1n/an/a0
Chromosome 14CM021581.1n/an/a0
Chromosome 15CM021582.1n/an/a0
Chromosome 16CM021583.1n/an/a0
Chromosome 17CM021584.1n/an/a0
Chromosome 18CM021585.1n/an/a0
Chromosome 19CM021586.1n/an/a0
Chromosome 20CM021587.1n/an/a0
Chromosome 21CM021588.1n/an/a0
Chromosome 22CM021589.1n/an/a0
Chromosome XCM021590.1n/an/a0
Chromosome YCM021591.1n/an/a0
unplacedn/an/an/a946

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,109,296,7489703,026,417,489145,105,6071,4410
Chromosome 1250,494,8171232,280,135250,494,8171110
Chromosome 2242,863,9711241,581,444242,863,971660
Chromosome 3199,488,2141199,411,976199,488,214570
Chromosome 4190,710,5091190,408,510190,710,509180
Chromosome 5181,785,2631181,608,321181,785,263620
Chromosome 6170,807,1011170,304,801170,807,101230
Chromosome 7160,875,6101160,669,899160,875,610660
Chromosome 8145,105,6071144,953,907145,105,607150
Chromosome 9138,570,4101122,110,712138,570,4101100
Chromosome 10134,785,3241134,496,302134,785,324410
Chromosome 11135,299,9391135,108,547135,299,939720
Chromosome 12135,375,1711135,338,731135,375,171820
Chromosome 1399,046,414198,916,57299,046,414570
Chromosome 1491,097,874190,842,87591,097,874490
Chromosome 1592,265,143191,928,71692,265,143340
Chromosome 1690,917,391182,665,19490,917,391640
Chromosome 1783,348,968183,177,33783,348,968300
Chromosome 1881,530,083181,463,36481,530,083720
Chromosome 1967,330,260167,231,98267,330,260160
Chromosome 2065,112,253165,005,95465,112,2531210
Chromosome 2141,133,653140,375,06441,133,653800
Chromosome 2243,354,611142,624,61243,354,6111170
Chromosome X154,200,0841153,528,413154,200,084380
Chromosome Y60,498,629127,085,37260,498,629330
unplaced53,299,44994653,298,749101,37770
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,570116,57016,57000