U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1105820v1

Organism name:
Acinetobacter lwoffii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:26953
Infraspecific name:
Strain: GC2
BioSample:
SAMN14119779
BioProject:
PRJNA607008
Submitter:
Istituto di Chimica Biomolecolare (I.C.B.),
Date:
2020/03/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_011058205.1 (latest)
RefSeq assembly accession:
GCF_011058205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAALFF01
Assembly method:
SPAdes v. 3.12.0
Expected final version:
yes
Genome coverage:
1907076.0x
Sequencing technology:
Sanger; Illumina 1.9

IDs: 6095231 [UID] 17339818 [GenBank] 17347358 [RefSeq]

See Genome Information for Acinetobacter lwoffii

There are 81 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from DSM 26953T
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2020 20:54:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,568
CDSs (total)::3,458
Genes (coding)::3,267
CDSs (with protein)::3,267
Genes (RNA)::110
rRNAs::8, 15, 5 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 23S)
partial rRNAs::4, 15, 4 (5S, 16S, 23S)
tRNAs::78
ncRNAs::4
Pseudo Genes (total)::191
CDSs (without protein)::191
Pseudo Genes (ambiguous residues)::0 of 191
Pseudo Genes (frameshifted)::41 of 191
Pseudo Genes (incomplete)::130 of 191
Pseudo Genes (internal stop)::44 of 191
Pseudo Genes (multiple problems)::21 of 191
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,449,117
Total ungapped length3,449,017
Gaps between scaffolds0
Number of scaffolds285
Scaffold N5041,542
Scaffold L5029
Number of contigs286
Contig N5041,542
Contig L5029
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)285

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,449,1172853,449,01741,54210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter lwoffiiAcinetobacter lwoffii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000248355.2Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = NIPH 512type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000248355.2Acinetobacter lwoffiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.0581.6383.97
Best-match type96.0581.6383.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna