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bBalReg1.pri

Organism name:
Balearica regulorum gibbericeps (East African grey crowned-crane)
Isolate:
bBalReg1
Sex:
female
BioSample:
SAMN12615749
BioProject:
PRJNA561890
Submitter:
Vertebrate Genomes Project
Date:
2020/03/05
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_011004875.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAAIYC01
Assembly method:
FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. SMRTLink7.0.1; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-12-04; VGP assembly pipeline individual v. 1.6
Expected final version:
no
Genome coverage:
59.56x
Sequencing technology:
PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_011004865.1 (alternate pseudohaplotype of diploid)

IDs: 6098551 [UID] 17355288 [GenBank]

See Genome Information for Balearica regulorum

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

This assembly represents the principal haplotype of the diploid genome Balearica regulorum gibbericeps and includes the chromosomes. The alternate haplotype sequences are in WGS project JAAIYD000000000

Global statistics

Total sequence length1,221,051,782
Total ungapped length1,216,255,745
Gaps between scaffolds0
Number of scaffolds105
Scaffold N5082,577,926
Scaffold L505
Number of contigs249
Contig N5023,326,060
Contig L5014
Total number of chromosomes and plasmids38
Number of component sequences (WGS or clone)105

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_011005075.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM021618.1n/an/a0
Chromosome 2CM021619.1n/an/a0
Chromosome 3CM021620.1n/an/a0
Chromosome 4CM021621.1n/an/a0
Chromosome 5CM021622.1n/an/a0
Chromosome 6CM021623.1n/an/a0
Chromosome 7CM021624.1n/an/a0
Chromosome 8CM021625.1n/an/a0
Chromosome 9CM021626.1n/an/a0
Chromosome 10CM021627.1n/an/a0
Chromosome 11CM021628.1n/an/a0
Chromosome 12CM021629.1n/an/a0
Chromosome 13CM021630.1n/an/a0
Chromosome 14CM021631.1n/an/a0
Chromosome 15CM021632.1n/an/a0
Chromosome 16CM021633.1n/an/a0
Chromosome 17CM021634.1n/an/a0
Chromosome 18CM021635.1n/an/a0
Chromosome 19CM021636.1n/an/a0
Chromosome 20CM021637.1n/an/a0
Chromosome 21CM021638.1n/an/a0
Chromosome 22CM021639.1n/an/a0
Chromosome 23CM021640.1n/an/a0
Chromosome 24CM021641.1n/an/a0
Chromosome 25CM021642.1n/an/a0
Chromosome 26CM021643.1n/an/a0
Chromosome 27CM021644.1n/an/a0
Chromosome 28CM021645.1n/an/a0
Chromosome 29CM021646.1n/an/a0
Chromosome 30CM021647.1n/an/a0
Chromosome 31CM021648.1n/an/a0
Chromosome 32CM021649.1n/an/a0
Chromosome 33CM021650.1n/an/a0
Chromosome 34CM021651.1n/an/a0
Chromosome 35CM021652.1n/an/a0
Chromosome WCM021654.1n/an/a0
Chromosome ZCM021653.1n/an/a0
unplacedn/an/an/a67

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,221,032,5481041,216,236,51182,577,9261440
Chromosome 1219,267,9151218,940,708219,267,91580
Chromosome 2168,560,4661167,829,792168,560,466130
Chromosome 3126,494,5091126,403,081126,494,50950
Chromosome 482,577,926182,577,00082,577,92670
Chromosome 571,435,996171,394,16371,435,99620
Chromosome 643,584,254143,317,55743,584,25430
Chromosome 741,402,003141,061,91341,402,00360
Chromosome 836,293,307136,135,55236,293,30750
Chromosome 929,641,262129,641,06229,641,26220
Chromosome 1024,828,647124,526,08724,828,64740
Chromosome 1124,411,880124,004,41224,411,88020
Chromosome 1224,096,099124,095,69924,096,09940
Chromosome 1323,271,930123,271,93023,271,93000
Chromosome 1421,959,113121,933,96221,959,11310
Chromosome 1519,200,437119,200,33719,200,43710
Chromosome 1617,475,937117,475,82417,475,93720
Chromosome 1716,783,481116,783,38116,783,48110
Chromosome 1814,238,113114,077,71514,238,11320
Chromosome 1913,071,912113,071,91213,071,91200
Chromosome 2012,992,293112,933,63612,992,29310
Chromosome 219,392,29819,392,2989,392,29800
Chromosome 228,432,97318,432,9738,432,97300
Chromosome 237,932,46117,932,3617,932,46110
Chromosome 247,860,16817,859,9687,860,16820
Chromosome 257,517,11117,516,6117,517,11110
Chromosome 266,172,08616,171,7866,172,08630
Chromosome 276,153,71616,153,7166,153,71600
Chromosome 283,552,85713,431,6433,552,85730
Chromosome 292,813,31812,813,0182,813,31830
Chromosome 301,385,68911,384,3891,385,68950
Chromosome 311,212,03611,211,6361,212,03640
Chromosome 32938,0091937,209938,00940
Chromosome 33660,8581660,858660,85800
Chromosome 34636,6641635,264636,66460
Chromosome 35517,4691517,069517,46940
Chromosome W31,083,356130,475,42431,083,35680
Chromosome Z87,595,863186,450,82987,595,863150
unplaced5,588,136675,583,736209,202160
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT19,234119,23419,23400