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ASM1066908v1

Organism name:
Caloranaerobacter azorensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: T3-1
BioSample:
SAMN14047995
BioProject:
PRJNA605075
Submitter:
National Marine Biodiversity Institute of Korea
Date:
2020/02/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_010669085.1 (latest)
RefSeq assembly accession:
GCF_010669085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
33.45x
Sequencing technology:
PacBio RSII

IDs: 5849561 [UID] 16814858 [GenBank] 17302678 [RefSeq]

See Genome Information for Caloranaerobacter azorensis

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from National Marine Biodiversity Institute of Korea
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/01/2023 22:31:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,659
CDSs (total)::2,561
Genes (coding)::2,521
CDSs (with protein)::2,521
Genes (RNA)::98
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::76
ncRNAs::4
Pseudo Genes (total)::40
CDSs (without protein)::40
Pseudo Genes (ambiguous residues)::0 of 40
Pseudo Genes (frameshifted)::34 of 40
Pseudo Genes (incomplete)::7 of 40
Pseudo Genes (internal stop)::2 of 40
Pseudo Genes (multiple problems)::3 of 40
CRISPR Arrays::8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,539,490
Total ungapped length2,539,490
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_010669095.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP048617.1=NZ_CP048617.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,539,490

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Caloranaerobacter azorensisCaloranaerobacter azorensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900129995.1Caloranaerobacter azorensis DSM 13643type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900129995.1Caloranaerobacter azorensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4484.0486.78
Best-match type98.4484.0486.78

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna