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ASM991405v1

Organism name:
Mixta intestinalis (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SRCM103226
BioSample:
SAMN08707616
BioProject:
PRJNA438180
Submitter:
Microbial Institute for Fermentation Industry
Date:
2020/01/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_009914055.1 (latest)
RefSeq assembly accession:
GCF_009914055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
FALCON v. v0.2.1
Expected final version:
yes
Genome coverage:
158.0x
Sequencing technology:
PacBio

IDs: 5488461 [UID] 15883588 [GenBank] 15927298 [RefSeq]

See Genome Information for Mixta intestinalis

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/04/2020 08:00:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,453
CDSs (total)::4,338
Genes (coding)::4,233
CDSs (with protein)::4,233
Genes (RNA)::115
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::8
Pseudo Genes (total)::105
CDSs (without protein)::105
Pseudo Genes (ambiguous residues)::0 of 105
Pseudo Genes (frameshifted)::62 of 105
Pseudo Genes (incomplete)::48 of 105
Pseudo Genes (internal stop)::12 of 105
Pseudo Genes (multiple problems)::14 of 105
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,784,919
Total ungapped length4,784,919
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_009914065.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP028271.1=NZ_CP028271.1
Plasmid unnamed1CP028272.1=NZ_CP028272.1

Assembly statistics

MoleculeTotal
Length
All4,784,919
Chromosome 4,699,599
Plasmid unnamed185,320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mixta intestinalisMixta intestinalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006517625.1Mixta tenebrionistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.1381.7684.03

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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