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bCarCri1.pri

Organism name:
Cariama cristata (Red-legged seriema)
Isolate:
bCarCri1
Sex:
female
BioSample:
SAMN12614807
BioProject:
PRJNA561892
Submitter:
Vertebrate Genomes Project
Date:
2019/12/31
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009819825.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WNMO01
Assembly method:
FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-16; VGP assembly pipeline individual v. 1.5
Expected final version:
no
Genome coverage:
50.93x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_009819485.1 (alternate pseudohaplotype of diploid)

IDs: 5428261 [UID] 15715218 [GenBank]

See Genome Information for Cariama cristata

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

This assembly represents the principal haplotype of the diploid genome Cariama cristata and includes the chromosomes. The alternate haplotype sequences are in WGS project WNMP00000000

Global statistics

Total sequence length1,215,245,693
Total ungapped length1,210,312,355
Gaps between scaffolds0
Number of scaffolds110
Scaffold N5030,176,635
Scaffold L5014
Number of contigs304
Contig N5013,514,148
Contig L5028
Total number of chromosomes and plasmids53
Number of component sequences (WGS or clone)110

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_009819865.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM020248.1n/an/a0
Chromosome 2CM020249.1n/an/a0
Chromosome 3CM020250.1n/an/a0
Chromosome 4CM020251.1n/an/a0
Chromosome 5CM020252.1n/an/a0
Chromosome 6CM020253.1n/an/a0
Chromosome 7CM020254.1n/an/a0
Chromosome 8CM020255.1n/an/a0
Chromosome 9CM020256.1n/an/a0
Chromosome 10CM020257.1n/an/a0
Chromosome 11CM020258.1n/an/a0
Chromosome 12CM020259.1n/an/a0
Chromosome 13CM020260.1n/an/a0
Chromosome 14CM020261.1n/an/a0
Chromosome 15CM020262.1n/an/a0
Chromosome 16CM020263.1n/an/a0
Chromosome 17CM020264.1n/an/a0
Chromosome 18CM020265.1n/an/a0
Chromosome 19CM020266.1n/an/a0
Chromosome 20CM020267.1n/an/a0
Chromosome 21CM020268.1n/an/a0
Chromosome 22CM020269.1n/an/a0
Chromosome 23CM020270.1n/an/a0
Chromosome 24CM020271.1n/an/a0
Chromosome 25CM020272.1n/an/a0
Chromosome 26CM020273.1n/an/a0
Chromosome 27CM020274.1n/an/a0
Chromosome 28CM020275.1n/an/a0
Chromosome 29CM020276.1n/an/a0
Chromosome 30CM020277.1n/an/a0
Chromosome 31CM020278.1n/an/a0
Chromosome 32CM020279.1n/an/a0
Chromosome 33CM020280.1n/an/a0
Chromosome 34CM020281.1n/an/a0
Chromosome 35CM020282.1n/an/a0
Chromosome 36CM020283.1n/an/a0
Chromosome 37CM020284.1n/an/a0
Chromosome 38CM020285.1n/an/a0
Chromosome 39CM020286.1n/an/a0
Chromosome 40CM020287.1n/an/a0
Chromosome 41CM020288.1n/an/a0
Chromosome 42CM020289.1n/an/a0
Chromosome 43CM020290.1n/an/a0
Chromosome 44CM020291.1n/an/a0
Chromosome 45CM020292.1n/an/a0
Chromosome 46CM020293.1n/an/a0
Chromosome 47CM020294.1n/an/a0
Chromosome 48CM020295.1n/an/a1
Chromosome 49CM020296.1n/an/a0
Chromosome 50CM020297.1n/an/a0
Chromosome WCM020299.1n/an/a4
Chromosome ZCM020298.1n/an/a0
unplacedn/an/an/a52

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule1,215,224,0751091,210,290,73730,176,6351940
Chromosome 1Assembled molecule50,158,509150,158,49650,158,50910
Chromosome 2Assembled molecule48,853,792148,852,87948,853,79260
Chromosome 3Assembled molecule47,620,032147,577,48947,620,03230
Chromosome 4Assembled molecule47,313,547147,111,48847,313,54730
Chromosome 5Assembled molecule45,053,423145,052,19745,053,42360
Chromosome 6Assembled molecule42,616,983142,469,60042,616,98310
Chromosome 7Assembled molecule41,945,511141,909,05141,945,51110
Chromosome 8Assembled molecule37,909,001137,198,57837,909,00150
Chromosome 9Assembled molecule37,389,531137,219,29737,389,53160
Chromosome 10Assembled molecule31,823,965131,255,46231,823,96530
Chromosome 11Assembled molecule31,818,961131,468,38431,818,96160
Chromosome 12Assembled molecule31,238,840130,825,83731,238,84060
Chromosome 13Assembled molecule30,176,635130,068,28430,176,63540
Chromosome 14Assembled molecule27,153,115127,152,60227,153,11520
Chromosome 15Assembled molecule26,816,855126,816,65526,816,85520
Chromosome 16Assembled molecule26,155,663125,891,94026,155,66360
Chromosome 17Assembled molecule25,531,620125,494,74225,531,62040
Chromosome 18Assembled molecule24,121,241123,804,12924,121,24110
Chromosome 19Assembled molecule23,620,085123,611,62523,620,08530
Chromosome 20Assembled molecule22,436,229122,435,42922,436,22940
Chromosome 21Assembled molecule22,218,802122,201,67122,218,80250
Chromosome 22Assembled molecule22,186,025122,185,92522,186,02510
Chromosome 23Assembled molecule21,456,571121,456,47121,456,57110
Chromosome 24Assembled molecule20,592,573120,591,77320,592,57340
Chromosome 25Assembled molecule20,392,918120,346,67520,392,91840
Chromosome 26Assembled molecule20,063,462120,063,36220,063,46210
Chromosome 27Assembled molecule19,550,563119,550,36319,550,56320
Chromosome 28Assembled molecule18,837,271118,764,39318,837,27130
Chromosome 29Assembled molecule18,591,359118,591,34618,591,35910
Chromosome 30Assembled molecule17,794,397117,626,03617,794,39710
Chromosome 31Assembled molecule17,071,899116,968,31117,071,89930
Chromosome 32Assembled molecule15,512,073115,191,56415,512,07340
Chromosome 33Assembled molecule15,326,017115,275,25915,326,01710
Chromosome 34Assembled molecule15,295,261115,295,23515,295,26120
Chromosome 35Assembled molecule14,400,081114,399,98114,400,08110
Chromosome 36Assembled molecule13,514,148113,514,14813,514,14800
Chromosome 37Assembled molecule13,137,949113,005,19313,137,94910
Chromosome 38Assembled molecule13,092,986113,092,88613,092,98610
Chromosome 39Assembled molecule12,968,468112,968,46812,968,46800
Chromosome 40Assembled molecule9,483,27719,434,3079,483,27710
Chromosome 41Assembled molecule8,608,49618,608,3968,608,49610
Chromosome 42Assembled molecule8,235,93018,235,9308,235,93000
Chromosome 43Assembled molecule7,476,79717,476,1977,476,79720
Chromosome 44Assembled molecule7,001,20416,980,8937,001,20450
Chromosome 45Assembled molecule6,307,72916,292,3936,307,72940
Chromosome 46Assembled molecule6,146,88916,146,1896,146,88930
Chromosome 47Assembled molecule3,059,67313,057,8733,059,67360
Chromosome 48AllAssembled moleculeUnlocalized scaffolds3,539,1572,544,142995,0152113,538,4572,543,542994,9152,544,1422,544,142995,015321000
Chromosome 49Assembled molecule1,495,88711,407,3591,495,88750
Chromosome 50Assembled molecule1,098,69311,096,5931,098,69350
Chromosome WAllAssembled moleculeUnlocalized scaffolds28,446,27213,730,35114,715,92151428,378,99413,682,35014,696,6445,760,20613,730,3513,943,1671147000
Chromosome ZAssembled molecule88,027,262187,914,96388,027,262210
unplacedAssembled molecule4,540,448524,258,969183,253180
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT21,618121,61821,61800
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