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bMerNub1.alt

Organism name:
Merops nubicus (carmine bee-eater)
Isolate:
bMerNub1
Sex:
female
BioSample:
SAMN12621035
BioProject:
PRJNA561895
Submitter:
Vertebrate Genomes Project
Date:
2019/12/23
Assembly type:
alternate-pseudohaplotype
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009819585.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WNMV01
Assembly method:
FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-15; VGP assembly pipeline individual v. 1.5
Expected final version:
no
Genome coverage:
60.12x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_009819595.1 (principal pseudohaplotype of diploid)

IDs: 5428131 [UID] 15714908 [GenBank]

See Genome Information for Merops nubicus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

This assembly represents the alternate haplotype of the diploid genome Merops nubicus. The principal haplotype sequences are in WGS project WNMU00000000

Global statistics

Total sequence length1,122,486,764
Total ungapped length1,122,486,764
Number of contigs3,296
Contig N501,966,515
Contig L50156
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3,296

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,122,486,7643,2961,122,486,7641,966,51500
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