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bCarCri1.alt

Organism name:
Cariama cristata (Red-legged seriema)
Isolate:
bCarCri1
Sex:
female
BioSample:
SAMN12614807
BioProject:
PRJNA561893
Submitter:
Vertebrate Genomes Project
Date:
2019/12/23
Assembly type:
alternate-pseudohaplotype
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009819485.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WNMP01
Assembly method:
FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-09-16; VGP assembly pipeline individual v. 1.5
Expected final version:
no
Genome coverage:
50.93x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_009819825.1 (principal pseudohaplotype of diploid)

IDs: 5428111 [UID] 15714858 [GenBank]

See Genome Information for Cariama cristata

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

This assembly represents the alternate haplotype of the diploid genome Cariama cristata. The principal haplotype sequences are in WGS project WNMO00000000

Global statistics

Total sequence length930,239,327
Total ungapped length930,239,229
Gaps between scaffolds0
Number of scaffolds2,840
Scaffold N501,876,668
Scaffold L50130
Number of contigs2,841
Contig N501,876,668
Contig L50130
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2,840

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced930,239,3272,840930,239,2291,876,66810
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