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bTauEry1.pri

Organism name:
Tauraco erythrolophus (red-crested turaco)
Isolate:
bTauEry1
Sex:
female
BioSample:
SAMN12621036
BioProject:
PRJNA561947
Submitter:
Vertebrate Genomes Project
Date:
2019/12/19
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009769465.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WOXW01
Assembly method:
FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_haplotigs v. v1.0.3+ 1.Nov.2018; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. 6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-08-13; VGP assembly pipeline individual v. 1.5
Expected final version:
no
Genome coverage:
65.99x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_009764505.1 (alternate pseudohaplotype of diploid)

IDs: 5398601 [UID] 15648928 [GenBank]

See Genome Information for Tauraco erythrolophus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

This assembly represents the principal haplotype of the diploid genome Tauraco erythrolophus and includes the chromosomes. The alternate haplotype sequences are in WGS project WOXX00000000

Global statistics

Total sequence length1,252,271,553
Total ungapped length1,225,870,858
Gaps between scaffolds0
Number of scaffolds140
Scaffold N5085,562,082
Scaffold L506
Number of contigs484
Contig N5011,927,027
Contig L5029
Total number of chromosomes and plasmids33
Number of component sequences (WGS or clone)140

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_009769475.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM019966.1n/an/a0
Chromosome 2CM019967.1n/an/a0
Chromosome 3CM019968.1n/an/a0
Chromosome 4CM019969.1n/an/a0
Chromosome 5CM019970.1n/an/a0
Chromosome 6CM019971.1n/an/a0
Chromosome 7CM019972.1n/an/a0
Chromosome 8CM019973.1n/an/a0
Chromosome 9CM019974.1n/an/a0
Chromosome 10CM019975.1n/an/a0
Chromosome 11CM019976.1n/an/a0
Chromosome 12CM019977.1n/an/a0
Chromosome 13CM019978.1n/an/a0
Chromosome 14CM019979.1n/an/a0
Chromosome 15CM019980.1n/an/a0
Chromosome 16CM019981.1n/an/a0
Chromosome 17CM019982.1n/an/a0
Chromosome 18CM019983.1n/an/a0
Chromosome 19CM019984.1n/an/a0
Chromosome 20CM019985.1n/an/a0
Chromosome 21CM019986.1n/an/a0
Chromosome 22CM019987.1n/an/a0
Chromosome 23CM019988.1n/an/a0
Chromosome 24CM019989.1n/an/a0
Chromosome 25CM019990.1n/an/a0
Chromosome 26CM019991.1n/an/a0
Chromosome 27CM019992.1n/an/a1
Chromosome 28CM019993.1n/an/a0
Chromosome 29CM019994.1n/an/a0
Chromosome 30CM019995.1n/an/a1
Chromosome 31CM019996.1n/an/a0
Chromosome WCM019998.1n/an/a0
Chromosome ZCM019997.1n/an/a0
unplacedn/an/an/a105

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,252,271,5531401,225,870,85885,562,0823440
Chromosome 1Assembled molecule136,888,4621136,510,736136,888,462200
Chromosome 2Assembled molecule133,258,6471131,332,714133,258,647180
Chromosome 3Assembled molecule105,529,6041104,991,505105,529,60480
Chromosome 4Assembled molecule88,466,996187,995,80788,466,996170
Chromosome 5Assembled molecule85,562,082185,114,28285,562,082170
Chromosome 6Assembled molecule74,184,283173,973,07274,184,283170
Chromosome 7Assembled molecule65,626,455165,199,36065,626,455120
Chromosome 8Assembled molecule45,285,844144,978,12245,285,84440
Chromosome 9Assembled molecule41,925,916141,448,75641,925,91650
Chromosome 10Assembled molecule36,177,909136,139,82236,177,90940
Chromosome 11Assembled molecule30,408,451130,084,82130,408,45130
Chromosome 12Assembled molecule24,572,459124,415,96924,572,45920
Chromosome 13Assembled molecule24,080,267124,050,69324,080,26740
Chromosome 14Assembled molecule23,987,355123,958,92823,987,35520
Chromosome 15Assembled molecule23,248,778123,248,77823,248,77800
Chromosome 16Assembled molecule21,861,376121,792,71521,861,37640
Chromosome 17Assembled molecule19,046,205119,016,89519,046,20520
Chromosome 18Assembled molecule17,982,552117,585,05017,982,55230
Chromosome 19Assembled molecule16,551,252116,342,12216,551,25240
Chromosome 20Assembled molecule14,239,515114,140,84614,239,51520
Chromosome 21Assembled molecule12,889,117112,889,10412,889,11710
Chromosome 22Assembled molecule12,777,345112,777,33212,777,34510
Chromosome 23Assembled molecule9,263,41619,112,4549,263,41620
Chromosome 24Assembled molecule8,797,66418,713,8728,797,66420
Chromosome 25Assembled molecule8,488,90618,036,0898,488,90670
Chromosome 26Assembled molecule7,911,31017,824,9077,911,31030
Chromosome 27AllAssembled moleculeUnlocalized scaffolds7,730,9966,998,155732,8412117,671,7406,938,899732,8416,998,1556,998,155732,841110000
Chromosome 28Assembled molecule6,393,15216,257,3616,393,15240
Chromosome 29Assembled molecule6,144,03915,745,4356,144,03920
Chromosome 30AllAssembled moleculeUnlocalized scaffolds2,920,9271,810,2041,110,7232112,741,9251,631,7021,110,2231,810,2041,810,2041,110,723651000
Chromosome 31Assembled molecule1,572,77411,570,7741,572,77440
Chromosome WAssembled molecule29,633,611114,910,28429,633,611780
Chromosome ZAssembled molecule93,020,717190,774,69693,020,717420
unplacedAssembled molecule15,843,17110514,523,892439,566430
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