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ASM974016v1

Organism name:
Leclercia sp. 1106151 (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 1106151
BioSample:
SAMN13394552
BioProject:
PRJNA591978
Submitter:
Beijing Institute of Microbiology and Epidemiology
Date:
2019/12/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_009740165.1 (latest)
RefSeq assembly accession:
GCF_009740165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 4.0
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
PacBio Sequel

IDs: 5383361 [UID] 15600428 [GenBank] 15611878 [RefSeq]

See Genome Information for Leclercia sp. Colony189

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/12/2020 03:57:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,631
CDSs (total)::4,511
Genes (coding)::4,447
CDSs (with protein)::4,447
Genes (RNA)::120
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::10
Pseudo Genes (total)::64
CDSs (without protein)::64
Pseudo Genes (ambiguous residues)::0 of 64
Pseudo Genes (frameshifted)::25 of 64
Pseudo Genes (incomplete)::28 of 64
Pseudo Genes (internal stop)::21 of 64
Pseudo Genes (multiple problems)::9 of 64
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,850,895
Total ungapped length4,850,895
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_009740175.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP046557.1=NZ_CP046557.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,850,895

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leclercia sp. Colony189Leclercia sp. Colony189

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000735515.1Leclercia adecarboxylatatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.0981.6679.36

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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