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bCorMon1.alt

Organism name:
Corvus moneduloides (New Caledonian crow)
Isolate:
bCorMon1
Sex:
female
BioSample:
SAMN12368441
BioProject:
PRJNA560982
Submitter:
Vertebrate Genomes Project
Date:
2019/11/12
Assembly type:
alternate-pseudohaplotype
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009651025.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
WHPP01
Assembly method:
FALCON v. 5.1.1; FALCON-Unzip + Arrow v. 1.0.2; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; longranger alignment v. 2.2.2; freebayes polishing v. 1.3.1; gEVAL manual curation v. 26 SEP 2019; VGP assembly pipeline v. 1.6
Expected final version:
no
Genome coverage:
62.08x
Sequencing technology:
PacBio Sequel I; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_009650955.1 (principal pseudohaplotype of diploid)

IDs: 5321771 [UID] 15394248 [GenBank]

See Genome Information for Corvus moneduloides

There are 4 assemblies for this organism

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History (Show revision history)

Comment

This assembly represents the alternate haplotype of the diploid genome Corvus moneduloides. The principal haplotype sequences are in WGS project WHPO00000000.

Global statistics

Total sequence length905,198,257
Total ungapped length905,198,257
Number of contigs894
Contig N502,563,033
Contig L50105
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)894

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced905,198,257894905,198,2572,563,03300
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