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ASM949558v1

Organism name:
Lentilactobacillus buchneri (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: LA1167
BioSample:
SAMN12018358
BioProject:
PRJNA548312
Submitter:
North Carolina State University
Date:
2019/11/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009495585.1 (latest)
RefSeq assembly accession:
GCF_009495585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VFBS01
Assembly method:
Geneious v. 7.1.7
Expected final version:
yes
Reference guided assembly:
GCF_000211375.1
Genome coverage:
56x
Sequencing technology:
Illumina HiSeq

IDs: 5124481 [UID] 14990958 [GenBank] 14995678 [RefSeq]

See Genome Information for Lentilactobacillus buchneri

There are 49 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/12/2019 14:28:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,611
CDSs (total)::2,541
Genes (coding)::2,426
CDSs (with protein)::2,426
Genes (RNA)::70
rRNAs::5, 1, 2 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::115
CDSs (without protein)::115
Pseudo Genes (ambiguous residues)::1 of 115
Pseudo Genes (frameshifted)::43 of 115
Pseudo Genes (incomplete)::50 of 115
Pseudo Genes (internal stop)::28 of 115
Pseudo Genes (multiple problems)::7 of 115
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,618,891
Total ungapped length2,613,358
Gaps between scaffolds0
Number of scaffolds17
Scaffold N502,394,969
Scaffold L501
Number of contigs73
Contig N5061,779
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)17

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,618,891172,613,3582,394,969560

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lentilactobacillus buchneriLentilactobacillus buchneri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_018314255.1Lentilactobacillus buchneritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018314255.1Lentilactobacillus buchneritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7289.9392.63
Best-match type99.7289.9392.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna