Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM929600v1

Organism name:: Yersinia pestis (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: SCPM-O-B-6291 (C-25)
BioSample:: SAMN12991209
BioProject:: PRJNA269675
Submitter:: SRCAMB
Date:: 2019/10/24
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_009296005.1 (latest)
RefSeq assembly accession:: GCF_009296005.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. v0.4.7
Expected final version:: yes
Genome coverage:: 152.8x
Sequencing technology:: Illumina MiSeq; Oxford Nanopore MiniION

IDs: 5025211 [UID] 14768828 [GenBank] 14769688 [RefSeq]

See Genome Information for Yersinia pestis

Pathogen Detection Resources

There are 1041 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009296005.1	=	GCF_009296005.1	ASM929600v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from SRC AMB
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/22/2023 15:46:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,184
CDSs (total)::4,079
Genes (coding)::3,905
CDSs (with protein)::3,905
Genes (RNA)::105
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::72
ncRNAs::11
Pseudo Genes (total)::174
CDSs (without protein)::174
Pseudo Genes (ambiguous residues)::0 of 174
Pseudo Genes (frameshifted)::74 of 174
Pseudo Genes (incomplete)::109 of 174
Pseudo Genes (internal stop)::27 of 174
Pseudo Genes (multiple problems)::28 of 174
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,614,086
Total ungapped length	4,614,086
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP045163.1	=	NZ_CP045163.1
Plasmid pMT	CP045164.1	=	NZ_CP045164.1
Plasmid pPCP	CP045165.1	=	NZ_CP045165.1

Molecule	Total Length
All	4,614,086
Chromosome	4,503,487
Plasmid pMT	100,989
Plasmid pPCP	9,610

	ANI	Query coverage	Subject coverage
Declared type	99.94	99.20	95.81
Best-match type	99.94	99.20	95.81

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM929600v1

See Genome Information for Yersinia pestis

Pathogen Detection Resources

There are 1041 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result