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ASM892238v1

Organism name:
Staphylococcus epidermidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SE56
BioSample:
SAMN12840231
BioProject:
PRJNA574294
Submitter:
University of Leicester
Date:
2019/10/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_008922385.1 (latest)
RefSeq assembly accession:
GCF_008922385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WBQK01
Assembly method:
SPAdes v. 3.12.0
Expected final version:
yes
Genome coverage:
88x
Sequencing technology:
Illumina HiSeq

IDs: 4836661 [UID] 14346548 [GenBank] 14454598 [RefSeq]

See Genome Information for Staphylococcus epidermidis

There are 4821 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/03/2019 08:43:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,856
CDSs (total)::2,778
Genes (coding)::2,679
CDSs (with protein)::2,679
Genes (RNA)::78
rRNAs::7, 7, 1 (5S, 16S, 23S)
complete rRNAs::7, 1 (5S, 23S)
partial rRNAs::7 (16S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::99
CDSs (without protein)::99
Pseudo Genes (ambiguous residues)::0 of 99
Pseudo Genes (frameshifted)::50 of 99
Pseudo Genes (incomplete)::39 of 99
Pseudo Genes (internal stop)::33 of 99
Pseudo Genes (multiple problems)::20 of 99
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,703,094
Total ungapped length2,703,094
Number of contigs220
Contig N50166,094
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)220

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,703,0942202,703,094166,09400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidisStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002087975.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002087975.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5186.4995.21
Best-match type99.5186.4995.21

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna