Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM870465v1

Organism name:: Streptomyces rimosus (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ATCC 10970
BioSample:: SAMN07709107
BioProject:: PRJNA412292
Submitter:: KAIST
Date:: 2019/09/26
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_008704655.1 (latest)
RefSeq assembly accession:: GCF_008704655.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 2.3
Expected final version:: yes
Genome coverage:: 50X
Sequencing technology:: PacBio

IDs: 4726201 [UID] 14078678 [GenBank] 14365578 [RefSeq]

See Genome Information for Streptomyces rimosus

Pathogen Detection Resources

There are 43 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008704655.1	=	GCF_008704655.1	ASM870465v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Korean Collection for Type Cultures.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::11/04/2023 04:07:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,213
CDSs (total)::8,121
Genes (coding)::7,945
CDSs (with protein)::7,945
Genes (RNA)::92
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::176
CDSs (without protein)::176
Pseudo Genes (ambiguous residues)::0 of 176
Pseudo Genes (frameshifted)::62 of 176
Pseudo Genes (incomplete)::139 of 176
Pseudo Genes (internal stop)::17 of 176
Pseudo Genes (multiple problems)::37 of 176
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	9,361,154
Total ungapped length	9,361,154
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.99	100.00	96.90
Best-match type	99.99	100.00	96.90

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM870465v1

See Genome Information for Streptomyces rimosus

Pathogen Detection Resources

There are 43 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result