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ASM869360v1

Organism name:
Citrobacter portucalensis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_617
BioSample:
SAMN11056332
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2019/09/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_008693605.1 (latest)
RefSeq assembly accession:
GCF_008693605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
canu v. 1.4
Genome coverage:
736.46x
Sequencing technology:
Pacbio; Illumina

IDs: 4720721 [UID] 14067508 [GenBank] 14100888 [RefSeq]

See Genome Information for Citrobacter portucalensis

There are 262 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/03/2023 04:19:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,669
CDSs (total)::4,553
Genes (coding)::4,489
CDSs (with protein)::4,489
Genes (RNA)::116
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::6
Pseudo Genes (total)::64
CDSs (without protein)::64
Pseudo Genes (ambiguous residues)::0 of 64
Pseudo Genes (frameshifted)::21 of 64
Pseudo Genes (incomplete)::43 of 64
Pseudo Genes (internal stop)::19 of 64
Pseudo Genes (multiple problems)::15 of 64
Pseudo Genes (short protein)::1 of 64
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,929,340
Total ungapped length4,929,340
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_008693615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP044098.1=NZ_CP044098.1
Plasmid unnamed1CP044099.1=NZ_CP044099.1

Assembly statistics

MoleculeTotal
Length
All4,929,340
Chromosome 4,926,736
Plasmid unnamed12,604

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citrobacter portucalensisCitrobacter portucalensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002042885.1Citrobacter portucalensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002042885.1Citrobacter portucalensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7189.8190.04
Best-match type98.7189.8190.04

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna