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ASM863190v1

Organism name:
Pantoea sp. Bo_21 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Bo_21
BioSample:
SAMN12692244
BioProject:
PRJNA563888
Submitter:
Cook Lab - University of California at Davis
Date:
2019/09/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_008631905.1 (latest)
RefSeq assembly accession:
GCF_008631905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VWVE01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
yes
Genome coverage:
169.1004986x
Sequencing technology:
Illumina

IDs: 4689531 [UID] 14001888 [GenBank] 14061818 [RefSeq]

See Genome Information for Pantoea sp. Bo_21

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/16/2019 05:01:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,782
CDSs (total)::4,675
Genes (coding)::4,529
CDSs (with protein)::4,529
Genes (RNA)::107
rRNAs::7, 4, 5 (5S, 16S, 23S)
complete rRNAs::7, 1, 1 (5S, 16S, 23S)
partial rRNAs::3, 4 (16S, 23S)
tRNAs::78
ncRNAs::13
Pseudo Genes (total)::146
CDSs (without protein)::146
Pseudo Genes (ambiguous residues)::1 of 146
Pseudo Genes (frameshifted)::49 of 146
Pseudo Genes (incomplete)::88 of 146
Pseudo Genes (internal stop)::47 of 146
Pseudo Genes (multiple problems)::35 of 146
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,922,942
Total ungapped length4,922,144
Gaps between scaffolds0
Number of scaffolds52
Scaffold N50232,122
Scaffold L508
Number of contigs55
Contig N50220,806
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,922,942524,922,144232,12230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pantoea sp. Bo_21Pantoea sp. Bo_21

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008632075.1Pantoea gossypiicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.4993.8593.58

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna