U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM836993v1

Organism name:
Paraburkholderia panacisoli (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DCY113
BioSample:
SAMN12568966
BioProject:
PRJNA560118
Submitter:
Kyung Hee University
Date:
2019/09/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_008369935.1 (latest)
RefSeq assembly accession:
GCF_008369935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VTUZ01
Assembly method:
SPAdes v. 3.10.1 March-2017
Expected final version:
yes
Genome coverage:
19.2x
Sequencing technology:
Illumina

IDs: 4559961 [UID] 13706328 [GenBank] 13749488 [RefSeq]

See Genome Information for Paraburkholderia panacisoli

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/04/2019 23:18:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::10,226
CDSs (total)::10,159
Genes (coding)::9,342
CDSs (with protein)::9,342
Genes (RNA)::67
rRNAs::2, 3, 3 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::3, 3 (16S, 23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::817
CDSs (without protein)::817
Pseudo Genes (ambiguous residues)::2 of 817
Pseudo Genes (frameshifted)::344 of 817
Pseudo Genes (incomplete)::600 of 817
Pseudo Genes (internal stop)::119 of 817
Pseudo Genes (multiple problems)::218 of 817
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,914,015
Total ungapped length10,913,961
Gaps between scaffolds0
Number of scaffolds158
Scaffold N50195,959
Scaffold L5017
Number of contigs160
Contig N50195,959
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)158

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,914,01515810,913,961195,95920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paraburkholderia panacisoliParaburkholderia panacisoli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902859915.1Paraburkholderia ultramaficatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.2044.3761.37

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected