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ASM836960v1

Organism name:
Vibrio cholerae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RFB16
BioSample:
SAMN12572458
BioProject:
PRJNA560225
Submitter:
University of Pittsburgh
Date:
2019/09/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_008369605.1 (latest)
RefSeq assembly accession:
GCF_008369605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye 2.4.1 v. 2.4.1
Expected final version:
yes
Genome coverage:
555x
Sequencing technology:
PacBio Sequel II

IDs: 4559801 [UID] 13705648 [GenBank] 13755488 [RefSeq]

See Genome Information for Vibrio cholerae

There are 10621 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/01/2023 06:04:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,804
CDSs (total)::3,667
Genes (coding)::3,628
CDSs (with protein)::3,628
Genes (RNA)::137
rRNAs::11, 10, 10 (5S, 16S, 23S)
complete rRNAs::11, 10, 10 (5S, 16S, 23S)
tRNAs::102
ncRNAs::4
Pseudo Genes (total)::39
CDSs (without protein)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::19 of 39
Pseudo Genes (incomplete)::20 of 39
Pseudo Genes (internal stop)::11 of 39
Pseudo Genes (multiple problems)::7 of 39
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,138,412
Total ungapped length4,138,412
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_008369615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP043554.1=NZ_CP043554.1
Chromosome 2CP043556.1=NZ_CP043556.1
Plasmid unnamedCP043555.1=NZ_CP043555.1

Assembly statistics

MoleculeTotal
Length
All4,138,412
Chromosome 12,948,589
Chromosome 21,140,710
Plasmid unnamed49,113

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio choleraeVibrio cholerae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000621645.1Vibrio cholerae ATCC 14035type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000621645.1Vibrio choleraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.3286.9789.49
Best-match type98.3286.9789.49

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna