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ASM836910v1

Organism name:
Aquicoccus porphyridii (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: L1 8-17
BioSample:
SAMN12179512
BioProject:
PRJNA552177
Submitter:
Ocean University of China
Date:
2019/09/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_008369105.1 (latest)
RefSeq assembly accession:
GCF_008369105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VINQ01
Assembly method:
SOAPdenovo v. JUN-2019
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 4559571 [UID] 13705158 [GenBank] 13723968 [RefSeq]

See Genome Information for Aquicoccus porphyridii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/03/2019 16:36:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,548
CDSs (total)::4,496
Genes (coding)::4,386
CDSs (with protein)::4,386
Genes (RNA)::52
rRNAs::2, 2, 3 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 2 (16S, 23S)
tRNAs::42
ncRNAs::3
Pseudo Genes (total)::110
CDSs (without protein)::110
Pseudo Genes (ambiguous residues)::0 of 110
Pseudo Genes (frameshifted)::31 of 110
Pseudo Genes (incomplete)::76 of 110
Pseudo Genes (internal stop)::20 of 110
Pseudo Genes (multiple problems)::17 of 110
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,513,837
Total ungapped length4,513,837
Number of contigs256
Contig N50179,538
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)256

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,513,8372564,513,837179,53800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aquicoccus porphyridiiAquicoccus porphyridii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900172255.1Roseovarius halotoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.5610.0512.18

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna