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Source database (GenBank or RefSeq) File type

ASM815232v1

Organism name:: Crassaminicella thermophila (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: SY095
BioSample:: SAMN12368985
BioProject:: PRJNA556796
Submitter:: Institute of Deep-Sea Science and Engineering, CAS
Date:: 2019/08/30
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_008152325.1 (latest)
RefSeq assembly accession:: GCF_008152325.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Canu v. 1.7
Expected final version:: yes
Genome coverage:: 950.0x
Sequencing technology:: Oxford Nanopore GridION

IDs: 4454811 [UID] 13478658 [GenBank] 13572938 [RefSeq]

See Genome Information for Crassaminicella thermophila

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008152325.1	=	GCF_008152325.1	ASM815232v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/21/2024 02:28:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,216
CDSs (total)::3,043
Genes (coding)::2,980
CDSs (with protein)::2,980
Genes (RNA)::173
rRNAs::12, 11, 11 (5S, 16S, 23S)
complete rRNAs::12, 11, 11 (5S, 16S, 23S)
tRNAs::135
ncRNAs::4
Pseudo Genes (total)::63
CDSs (without protein)::63
Pseudo Genes (ambiguous residues)::0 of 63
Pseudo Genes (frameshifted)::36 of 63
Pseudo Genes (incomplete)::30 of 63
Pseudo Genes (internal stop)::7 of 63
Pseudo Genes (multiple problems)::10 of 63
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,083,380
Total ungapped length	3,083,380
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP042243.1	=	NZ_CP042243.1
Plasmid pCT01	CP042244.1	=	NZ_CP042244.1

Molecule	Total Length
All	3,083,380
Chromosome	3,046,753
Plasmid pCT01	36,627

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	82.94	24.93	27.89

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ASM815232v1

See Genome Information for Crassaminicella thermophila

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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