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Source database (GenBank or RefSeq) File type

ASM799715v1

Organism name:: Aequorivita antarctica (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: SW49
BioSample:: SAMN10785479
BioProject:: PRJNA516237
Submitter:: University of Tasmania
Date:: 2019/08/14
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_007997155.1 (latest)
RefSeq assembly accession:: GCF_007997155.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: VORT01
Assembly method:: SPAdes v. 3.9
Expected final version:: yes
Genome coverage:: 350.0x
Sequencing technology:: Illumina HiSeq

IDs: 4338511 [UID] 13194898 [GenBank] 13204668 [RefSeq]

See Genome Information for Aequorivita antarctica

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_007997155.1	=	GCF_007997155.1	ASM799715v1	Contig	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Tasmanian Institute of Agriculture, University of Tasmania, Sandy Bay Campus, College Road, Sandy Bay, Hobart, Tasmania 7005, Australia
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can ... be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/09/2019 12:52:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,544
CDSs (total)::3,499
Genes (coding)::3,465
CDSs (with protein)::3,465
Genes (RNA)::45
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::36
ncRNAs::4
Pseudo Genes (total)::34
CDSs (without protein)::34
Pseudo Genes (ambiguous residues)::0 of 34
Pseudo Genes (frameshifted)::10 of 34
Pseudo Genes (incomplete)::21 of 34
Pseudo Genes (internal stop)::8 of 34
Pseudo Genes (multiple problems)::5 of 34
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,844,651
Total ungapped length	3,844,651
Number of contigs	66
Contig N50	290,064
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	66

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.24	36.09	41.65

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ASM799715v1

See Genome Information for Aequorivita antarctica

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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