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ASM799219v1

Organism name:
Methylobacterium oxalidis (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 107715
BioSample:
SAMD00172657
BioProject:
PRJDB6295
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2019/07/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007992195.1 (latest)
RefSeq assembly accession:
GCF_007992195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BJZU01
Assembly method:
newbler v. 3.0
Genome coverage:
85x
Sequencing technology:
Illumina HiSeq 1000

IDs: 4335981 [UID] 13186128 [GenBank] 13214388 [RefSeq]

See Genome Information for Methylobacterium oxalidis

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at DFAST https://dfast.nig.ac.jp/

Global statistics

Total sequence length6,288,989
Total ungapped length6,288,989
Number of contigs343
Contig N5050,037
Contig L5036
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)343

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,288,9893436,288,98950,03700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylobacterium oxalidisMethylobacterium oxalidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022179505.1Methylobacterium oxalidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022179505.1Methylobacterium oxalidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.6298.42
Best-match type99.9998.6298.42

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna