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ASM795435v1

Organism name:
Colwellia hornerae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ACAM 607
BioSample:
SAMN10785765
BioProject:
PRJNA516280
Submitter:
University of Tasmania
Date:
2019/08/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007954355.1 (latest)
RefSeq assembly accession:
GCF_007954355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VOLR01
Assembly method:
SPAdes v. 3.9
Expected final version:
yes
Genome coverage:
148x
Sequencing technology:
Illumina HiSeq

IDs: 4317101 [UID] 13146128 [GenBank] 13206388 [RefSeq]

See Genome Information for Colwellia hornerae

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/05/2019 12:43:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,826
CDSs (total)::3,738
Genes (coding)::3,684
CDSs (with protein)::3,684
Genes (RNA)::88
rRNAs::6, 1, 4 (5S, 16S, 23S)
complete rRNAs::6, 1 (5S, 16S)
partial rRNAs::4 (23S)
tRNAs::73
ncRNAs::4
Pseudo Genes (total)::54
CDSs (without protein)::54
Pseudo Genes (ambiguous residues)::0 of 54
Pseudo Genes (frameshifted)::18 of 54
Pseudo Genes (incomplete)::27 of 54
Pseudo Genes (internal stop)::18 of 54
Pseudo Genes (multiple problems)::9 of 54
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,424,918
Total ungapped length4,424,918
Number of contigs100
Contig N50155,355
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)100

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,424,9181004,424,918155,35500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Colwellia horneraeColwellia hornerae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007954275.1Colwellia demingiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.264.043.42

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected