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ASM783391v1

Organism name:
Micromonospora sp. HM134 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: HM134
BioSample:
SAMN12069784
BioProject:
PRJNA549028
Submitter:
Zhejiang University
Date:
2019/08/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_007833915.1 (latest)
RefSeq assembly accession:
GCF_007833915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. V8.3
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina HiSeq; PacBio RSII

IDs: 4256731 [UID] 12998178 [GenBank] 13049998 [RefSeq]

See Genome Information for Micromonospora sp. HM134

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/27/2022 17:57:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,667
CDSs (total)::6,597
Genes (coding)::6,438
CDSs (with protein)::6,438
Genes (RNA)::70
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::159
CDSs (without protein)::159
Pseudo Genes (ambiguous residues)::0 of 159
Pseudo Genes (frameshifted)::41 of 159
Pseudo Genes (incomplete)::131 of 159
Pseudo Genes (internal stop)::6 of 159
Pseudo Genes (multiple problems)::17 of 159
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,565,212
Total ungapped length7,565,212
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_007833925.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP041061.1=NZ_CP041061.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,565,212

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Micromonospora sp. HM134Micromonospora sp. HM134

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002210435.1Micromonospora wenchangensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.7585.0785.66

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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