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ASM783321v1

Organism name:
Sphingomonas suaedae (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: XS-10
BioSample:
SAMN12359489
BioProject:
PRJNA556558
Submitter:
Inner Mongolia University
Date:
2019/08/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007833215.1 (latest)
RefSeq assembly accession:
GCF_007833215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 4
Expected final version:
yes
Genome coverage:
214.0x
Sequencing technology:
PacBio

IDs: 4256381 [UID] 12997478 [GenBank] 13049198 [RefSeq]

See Genome Information for Sphingomonas suaedae

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Ji-Quan Sun

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/06/2023 02:54:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,974
CDSs (total)::3,921
Genes (coding)::3,882
CDSs (with protein)::3,882
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::39
CDSs (without protein)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::22 of 39
Pseudo Genes (incomplete)::20 of 39
Pseudo Genes (internal stop)::0 of 39
Pseudo Genes (multiple problems)::3 of 39
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,154,291
Total ungapped length4,154,291
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_007833225.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP042239.1=NZ_CP042239.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,154,291

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingomonas suaedaeSphingomonas suaedae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002797435.1Sphingomonas koreensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.9835.6533.67

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected