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ASM783044v1

Organism name:
Sphingobacterium siyangense (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.6855
BioSample:
SAMN02927931
BioProject:
PRJNA255617
Submitter:
DOE Joint Genome Institute
Date:
2019/08/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007830445.1 (latest)
RefSeq assembly accession:
GCF_007830445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VLKR01
Assembly method:
AllPaths v. r46652
Expected final version:
no
Genome coverage:
331.0x
Sequencing technology:
Illumina HiSeq

IDs: 4255271 [UID] 12988138 [GenBank] 13038368 [RefSeq]

See Genome Information for Sphingobacterium siyangense

There are 16 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length6,294,929
Total ungapped length6,294,909
Gaps between scaffolds0
Number of scaffolds71
Scaffold N50150,686
Scaffold L5014
Number of contigs73
Contig N50147,138
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)71

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,294,929716,294,909150,68620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingobacterium siyangenseSphingobacterium siyangense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009660355.1Sphingobacterium paramultivorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.9776.7072.31

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected