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ASM781383v1

Organism name:
Staphylococcus chromogenes (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 20B
BioSample:
SAMN09714506
BioProject:
PRJNA482667
Submitter:
Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal
Date:
2019/08/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • many frameshifted proteins
GenBank assembly accession:
GCA_007813835.1 (latest)
RefSeq assembly accession:
GCF_007813835.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 1.4
Expected final version:
yes
Genome coverage:
515.0x
Sequencing technology:
PacBio

IDs: 4247191 [UID] 12970058 [GenBank] 14361778 [RefSeq]

See Genome Information for Staphylococcus chromogenes

There are 141 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from FCAV/UNESP SC20B.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/26/2018 10:53:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,417
CDS (total)::2,334
Genes (coding)::2,060
CDS (coding)::2,060
Genes (RNA)::83
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::274
Pseudo Genes (ambiguous residues)::0 of 274
Pseudo Genes (frameshifted)::253 of 274
Pseudo Genes (incomplete)::22 of 274
Pseudo Genes (internal stop)::13 of 274
Pseudo Genes (multiple problems)::13 of 274
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,424,566
Total ungapped length2,424,566
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_007813845.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP031471.1=NZ_CP031471.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,424,566

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus chromogenesStaphylococcus chromogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017775145.1Staphylococcus chromogenestype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017775145.1Staphylococcus chromogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4189.5595.47
Best-match type99.4189.5595.47

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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