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ASM767823v1

Organism name:
Staphylococcus epidermidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DE0179
BioSample:
SAMN11792339
BioProject:
PRJNA543692
Submitter:
BGI
Date:
2019/07/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_007678235.1 (latest)
RefSeq assembly accession:
GCF_007678235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VEEE01
Assembly method:
SPAdes v. v3.11.1
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
BGISEQ

IDs: 4173711 [UID] 12815078 [GenBank] 13039228 [RefSeq]

See Genome Information for Staphylococcus epidermidis

Pathogen Detection Resources

There are 4822 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,526,501
Total ungapped length2,526,119
Gaps between scaffolds0
Number of scaffolds65
Scaffold N50196,045
Scaffold L505
Number of contigs69
Contig N50196,045
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)65

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,526,501652,526,119196,04540

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidisStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006742205.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006742205.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1088.1491.74
Best-match type97.1088.1491.74

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna