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ASM766630v1

Organism name:
Staphylococcus epidermidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DE0541
BioSample:
SAMN11792701
BioProject:
PRJNA543692
Submitter:
BGI
Date:
2019/07/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_007666305.1 (latest)
RefSeq assembly accession:
GCF_007666305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VDOX01
Assembly method:
SPAdes v. v3.11.1
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
BGISEQ

IDs: 4167751 [UID] 12802138 [GenBank] 13039408 [RefSeq]

See Genome Information for Staphylococcus epidermidis

Pathogen Detection Resources

There are 4822 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,397,941
Total ungapped length2,397,650
Gaps between scaffolds0
Number of scaffolds75
Scaffold N50130,752
Scaffold L507
Number of contigs78
Contig N50130,752
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)75

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,397,941752,397,650130,75230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidisStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002087975.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002087975.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5395.3893.12
Best-match type99.5395.3893.12

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna