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Source database (GenBank or RefSeq) File type

ASM764125v1

Organism name:: Sporomusa termitida (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: DSM 4440
BioSample:: SAMN10963686
BioProject:: PRJNA523110
Submitter:: Georg-August-University Goettingen
Date:: 2019/07/30
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_007641255.1 (latest)
RefSeq assembly accession:: GCF_007641255.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. v0.4.6
Genome coverage:: 155
Sequencing technology:: Illumina; Nanopore

IDs: 4155511 [UID] 12776218 [GenBank] 12995548 [RefSeq]

See Genome Information for Sporomusa termitida

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_007641255.1	=	GCF_007641255.1	ASM764125v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::05/05/2023 04:02:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,964
CDSs (total)::4,822
Genes (coding)::4,782
CDSs (with protein)::4,782
Genes (RNA)::142
rRNAs::10, 12, 10 (5S, 16S, 23S)
complete rRNAs::10, 12, 10 (5S, 16S, 23S)
tRNAs::104
ncRNAs::6
Pseudo Genes (total)::40
CDSs (without protein)::40
Pseudo Genes (ambiguous residues)::0 of 40
Pseudo Genes (frameshifted)::20 of 40
Pseudo Genes (incomplete)::27 of 40
Pseudo Genes (internal stop)::3 of 40
Pseudo Genes (multiple problems)::8 of 40
CRISPR Arrays::9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,316,008
Total ungapped length	5,316,008
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP036259.1	=	NZ_CP036259.1
Plasmid pSPTER	CP036260.1	=	NZ_CP036260.1

Molecule	Total Length
All	5,316,008
Chromosome	5,184,890
Plasmid pSPTER	131,118

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	81.04	14.94	15.32

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ASM764125v1

See Genome Information for Sporomusa termitida

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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