U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM763763v1

Organism name:
Lacticaseibacillus paracasei (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NJ
BioSample:
SAMN12319598
BioProject:
PRJNA555460
Submitter:
Huazhong Agricultural University
Date:
2019/07/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_007637635.1 (latest)
RefSeq assembly accession:
GCF_007637635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. Canu v1.5
Expected final version:
yes
Genome coverage:
127.06x
Sequencing technology:
Oxford Nanopore

IDs: 4153731 [UID] 12772658 [GenBank] 12992168 [RefSeq]

See Genome Information for Lacticaseibacillus paracasei

There are 472 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/13/2023 01:31:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,968
CDSs (total)::2,891
Genes (coding)::2,778
CDSs (with protein)::2,778
Genes (RNA)::77
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::113
CDSs (without protein)::113
Pseudo Genes (ambiguous residues)::0 of 113
Pseudo Genes (frameshifted)::58 of 113
Pseudo Genes (incomplete)::47 of 113
Pseudo Genes (internal stop)::18 of 113
Pseudo Genes (multiple problems)::9 of 113
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,083,412
Total ungapped length3,083,412
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_007637645.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP041944.1=NZ_CP041944.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,083,412

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus paracaseiLacticaseibacillus paracasei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000829035.1Lacticaseibacillus paracasei subsp. paracaseitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000829035.1Lacticaseibacillus paracaseitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6682.1183.90
Best-match type98.6682.1183.90

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna