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SESE.1.0

Organism name:
Sequoia sempervirens (seed plants)
Isolate:
SESE104
BioSample:
SAMN11654426
BioProject:
PRJNA542879
Submitter:
Johns Hopkins University
Date:
2019/07/29
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_007258455.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VDFB01
Assembly method:
MaSuRCA v. 3.2.8
Expected final version:
no
Genome coverage:
144.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore PromethION

IDs: 4135941 [UID] 12711658 [GenBank]

See Genome Information for Sequoia sempervirens

History (Show revision history)

Global statistics

Total sequence length26,537,244,740
Total ungapped length26,454,275,906
Gaps between scaffolds0
Number of scaffolds517,852
Scaffold N50110,425
Scaffold L5054,396
Number of contigs548,916
Contig N5097,163
Contig L5061,057
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)517,852

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_007258465.1)

This assembly-unit does not have any assembled chromosomes or linkage groups. Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All26,534,885,002517,81926,451,918,581110,42931,0630
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,359,738332,357,32583,41510
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds2,225,92202,225,922320322,223,50902,223,50983,415083,415101000
Chloroplast PltdAssembled molecule133,8161133,816133,81600
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