Format

Download Assembly

Send to:

Choose Destination

SEGI.1.0

Organism name:
Sequoiadendron giganteum (California big-tree)
Isolate:
SEGI21
BioSample:
SAMN11640747
BioProject:
PRJNA541481
Submitter:
Johns Hopkins University
Date:
2019/07/29
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_007115665.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VCHN01
Assembly method:
MaSuRCA v. 3.2.4
Expected final version:
no
Genome coverage:
160.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore PromethION

IDs: 4129391 [UID] 12711528 [GenBank]

See Genome Information for Sequoiadendron giganteum

History (Show revision history)

Global statistics

Total sequence length8,122,132,770
Total ungapped length8,103,142,170
Gaps between scaffolds0
Number of scaffolds39,798
Scaffold N50490,521
Scaffold L504,731
Number of contigs49,652
Contig N50359,594
Contig L506,282
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)39,798

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_007115675.1)

This assembly-unit does not have any assembled chromosomes or linkage groups. Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All8,120,923,97839,7788,101,933,378490,6809,8540
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule1,208,792201,208,792114,18300
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds1,077,31401,077,314190191,077,31401,077,31464,765064,765000000
Chloroplast PltdAssembled molecule131,4781131,478131,47800
Support Center