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ASM700473v1

Organism name:
Salinigranum halophilum (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: YJ-53
BioSample:
SAMN11382603
BioProject:
PRJNA531820
Submitter:
Jiangsu Universiry
Date:
2019/07/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007004735.1 (latest)
RefSeq assembly accession:
GCF_007004735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SSNL01
Assembly method:
SOAPdenovo v. AUGUST-2018
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 3832881 [UID] 12099368 [GenBank] 12211958 [RefSeq]

See Genome Information for Salinigranum halophilum

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Jiangsu University, School of Food and Biologicol Engineering

Global statistics

Total sequence length4,196,798
Total ungapped length4,196,788
Gaps between scaffolds0
Number of scaffolds11
Scaffold N50729,428
Scaffold L503
Number of contigs12
Contig N50646,974
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,196,798114,196,788729,42810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salinigranum halophilumSalinigranum halophilum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002906575.1Salinigranum rubrumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.1555.5146.85

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected