Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM700454v3

Organism name:: Shewanella eurypsychrophilus (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: YLB-08
BioSample:: SAMN12228874
BioProject:: PRJNA553078
Submitter:: Third Institute of Oceanography, State of Oceanic Administration
Date:: 2021/07/19
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_007004545.3 (latest)
RefSeq assembly accession:: GCF_007004545.3 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SPAdes v. 3.8.1
Expected final version:: yes
Genome coverage:: 200.0x
Sequencing technology:: IIIumina HiSeq

IDs: 10960001 [UID] 28966078 [GenBank] 29019048 [RefSeq]

See Genome Information for Shewanella eurypsychrophilus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_007004545.3	=	GCF_007004545.3	ASM700454v3	Complete Genome	Latest GenBank, Latest RefSeq
GCA_007004545.2	=	GCF_007004545.2	ASM700454v2	Complete Genome	Replaced GenBank, Replaced RefSeq
GCA_007004545.1	=	GCF_007004545.1	ASM700454v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from MCCC 1A12718

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2023 00:39:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,054
CDSs (total)::4,886
Genes (coding)::4,833
CDSs (with protein)::4,833
Genes (RNA)::168
rRNAs::14, 13, 13 (5S, 16S, 23S)
complete rRNAs::14, 13, 13 (5S, 16S, 23S)
tRNAs::124
ncRNAs::4
Pseudo Genes (total)::53
CDSs (without protein)::53
Pseudo Genes (ambiguous residues)::0 of 53
Pseudo Genes (frameshifted)::16 of 53
Pseudo Genes (incomplete)::46 of 53
Pseudo Genes (internal stop)::8 of 53
Pseudo Genes (multiple problems)::16 of 53
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,851,320
Total ungapped length	5,851,320
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	83.41	38.14	35.12

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM700454v3

See Genome Information for Shewanella eurypsychrophilus

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result