U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM671504v1

Organism name:
Amycolatopsis cihanbeyliensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:45679
Infraspecific name:
Strain: DSM 45679
BioSample:
SAMN11512385
BioProject:
PRJNA538220
Submitter:
DOE Joint Genome Institute
Date:
2019/07/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_006715045.1 (latest)
RefSeq assembly accession:
GCF_006715045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VFML01
Assembly method:
HGAP v. smrtlink/6.0.0.47835, HGAP 4 (0.2.1)
Expected final version:
no
Genome coverage:
405.0x
Sequencing technology:
PacBio

IDs: 3676781 [UID] 11777848 [GenBank] 11979518 [RefSeq]

See Genome Information for Amycolatopsis cihanbeyliensis

History (Show revision history)

Comment

Global statistics

Total sequence length7,435,439
Total ungapped length7,435,439
Number of contigs2
Contig N506,286,745
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,435,43927,435,4396,286,74500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Amycolatopsis cihanbeyliensisAmycolatopsis cihanbeyliensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018885265.1Amycolatopsis aidingensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.8074.6772.51

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected