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ASM584398v1

Organism name:: Caminibacter mediatlanticus TB-2 (e-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: TB-2
BioSample:: SAMN02436122
BioProject:: PRJNA543630
Submitter:: Rutgers University
Date:: 2019/05/26
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_005843985.1 (latest)
RefSeq assembly accession:: GCF_005843985.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler hybrid assembly v. v. 0.4.3
Expected final version:: yes
Reference guided assembly:: ABCJ00000000.1
Genome coverage:: 30.0x
Sequencing technology:: Illumina MiSeq; Oxford Nanopore MiniION

IDs: 3195491 [UID] 10687488 [GenBank] 10740328 [RefSeq]

See Genome Information for Caminibacter mediatlanticus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005843985.1	=	GCF_005843985.1	ASM584398v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Rutgers University Deep-Sea Microbiology Lab, Department of Biochemistry and Microbiology
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::04/28/2023 10:58:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,815
CDSs (total)::1,752
Genes (coding)::1,747
CDSs (with protein)::1,747
Genes (RNA)::63
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::5
CDSs (without protein)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::2 of 5
Pseudo Genes (incomplete)::2 of 5
Pseudo Genes (internal stop)::1 of 5
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,685,887
Total ungapped length	1,685,887
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	98.74	91.05	92.27
Best-match type	98.74	91.05	92.27

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ASM584398v1

See Genome Information for Caminibacter mediatlanticus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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