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ASM523913v1

Organism name:
Natronomonas salsuginis (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: F20-122
BioSample:
SAMN09371776
BioProject:
PRJNA474733
Submitter:
University of Sevilla, Spain
Date:
2019/05/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_005239135.1 (latest)
RefSeq assembly accession:
GCF_005239135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QKNX01
Assembly method:
a5 v. a5 OMOCS_0005
Expected final version:
yes
Genome coverage:
352.11x
Sequencing technology:
Illumina HiSeq

IDs: 2798941 [UID] 9846208 [GenBank] 9862598 [RefSeq]

See Genome Information for Natronomonas salsuginis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/29/2019 13:24:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,985
CDSs (total)::2,936
Genes (coding)::2,819
CDSs (with protein)::2,819
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::2
Pseudo Genes (total)::117
CDSs (without protein)::117
Pseudo Genes (ambiguous residues)::0 of 117
Pseudo Genes (frameshifted)::36 of 117
Pseudo Genes (incomplete)::71 of 117
Pseudo Genes (internal stop)::45 of 117
Pseudo Genes (multiple problems)::28 of 117
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,904,418
Total ungapped length2,904,418
Number of contigs12
Contig N50675,769
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,904,418122,904,418675,76900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Natronomonas salsuginisNatronomonas salsuginis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000591055.1Natronomonas moolapensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.9322.8122.75

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected