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Source database (GenBank or RefSeq) File type

ASM522132v1

Organism name:: Agrobacterium tumefaciens (Agrobacterium genomosp. 1)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: CFBP5499
BioSample:: SAMN11489449
BioProject:: PRJNA534389
Submitter:: Academia Sinica
Date:: 2019/05/07
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_005221325.1 (latest)
RefSeq assembly accession:: GCF_005221325.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Velvet v. 1.2.10
Expected final version:: yes
Genome coverage:: 193.0x
Sequencing technology:: Illumina MiSeq

IDs: 2790151 [UID] 9824318 [GenBank] 9840728 [RefSeq]

See Genome Information for Agrobacterium tumefaciens

Pathogen Detection Resources

There are 259 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005221325.1	=	GCF_005221325.1	ASM522132v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_005221325.1-RS_2024_03_22
Annotation Date::03/22/2024 02:13:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,846
CDSs (total)::5,776
Genes (coding)::5,694
CDSs (with protein)::5,694
Genes (RNA)::70
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::82
CDSs (without protein)::82
Pseudo Genes (ambiguous residues)::0 of 82
Pseudo Genes (frameshifted)::43 of 82
Pseudo Genes (incomplete)::59 of 82
Pseudo Genes (internal stop)::19 of 82
Pseudo Genes (multiple problems)::31 of 82
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	6,138,594
Total ungapped length	6,138,594
Total number of chromosomes and plasmids	6

Molecule name	GenBank sequence		RefSeq sequence
Chromosome circular	CP039888.1	=	NZ_CP039888.1
Chromosome linear	CP039889.1	=	NZ_CP039889.1
Plasmid pAtCFBP5499a	CP039890.1	=	NZ_CP039890.1
Plasmid pAtCFBP5499b	CP039891.1	=	NZ_CP039891.1
Plasmid pAtCFBP5499c	CP039892.1	=	NZ_CP039892.1
Plasmid pTiCFBP5499	CP039893.1	=	NZ_CP039893.1

Molecule	Total Length
All	6,138,594
Chromosome circular	2,949,438
Chromosome linear	2,301,325
Plasmid pAtCFBP5499a	438,854
Plasmid pAtCFBP5499b	158,104
Plasmid pAtCFBP5499c	70,848
Plasmid pTiCFBP5499	220,025

	ANI	Query coverage	Subject coverage
Declared type	87.26	67.56	70.20
Best-match type	92.24	72.94	78.91

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ASM522132v1

See Genome Information for Agrobacterium tumefaciens

Pathogen Detection Resources

There are 259 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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