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ASM491693v1

Organism name:
Salinigranum halophilum (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: DYF38
BioSample:
SAMN11382565
BioProject:
PRJNA531811
Submitter:
Jiangsu Universiry
Date:
2019/04/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004916935.1 (latest)
RefSeq assembly accession:
GCF_004916935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SSNM01
Assembly method:
SOAPdenovo v. JULY-2018
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 2638221 [UID] 9491538 [GenBank] 9499718 [RefSeq]

See Genome Information for Salinigranum halophilum

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Jiangsu University, School of Food and Biologicol Engineering

Global statistics

Total sequence length4,403,890
Total ungapped length4,403,890
Number of contigs20
Contig N50497,129
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,403,890204,403,890497,12900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salinigranum halophilumSalinigranum halophilum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007004735.1Salinigranum halophilumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007004735.1Salinigranum halophilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2284.6588.83
Best-match type98.2284.6588.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna