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ASM476635v1

Organism name:
Weissella confusa (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: VTT E-95616
BioSample:
SAMN08627289
BioProject:
PRJNA436478
Submitter:
University of Saskatchewan
Date:
2019/04/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004766355.1 (latest)
RefSeq assembly accession:
GCF_004766355.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PVSO01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
yes
Genome coverage:
33x
Sequencing technology:
Illumina MiSeq

IDs: 2555661 [UID] 9253548 [GenBank] 9264208 [RefSeq]

See Genome Information for Weissella confusa

There are 157 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/09/2018 14:48:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,247
CDS (total)::2,103
Genes (coding)::1,954
CDS (coding)::1,954
Genes (RNA)::144
rRNAs::10, 40, 9 (5S, 16S, 23S)
complete rRNAs::9, 1 (5S, 23S)
partial rRNAs::1, 40, 8 (5S, 16S, 23S)
tRNAs::82
ncRNAs::3
Pseudo Genes (total)::149
Pseudo Genes (ambiguous residues)::0 of 149
Pseudo Genes (frameshifted)::62 of 149
Pseudo Genes (incomplete)::44 of 149
Pseudo Genes (internal stop)::60 of 149
Pseudo Genes (multiple problems)::16 of 149
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,246,744
Total ungapped length2,246,744
Number of contigs139
Contig N5049,218
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,246,7441392,246,74449,21800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Weissella confusaWeissella confusa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001436895.1Weissella confusasuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001436895.1Weissella confusasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9184.0685.74
Best-match type97.9184.0685.74

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna