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ASM476580v1

Organism name:
Halorussus halobius (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: HD8-83
BioSample:
SAMN10721430
BioProject:
PRJNA514221
Submitter:
Jiangsu University
Date:
2019/03/29
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004765805.1 (latest)
RefSeq assembly accession:
GCF_004765805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SBIU01
Assembly method:
SOAPdenovo v. MAY-2018
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 2561221 [UID] 9283238 [GenBank] 9298088 [RefSeq]

See Genome Information for Halorussus halobius

History (Show revision history)

Comment

Bacteria and source DNA available from School of Food & Biological Engineering, Jiangsu University

Global statistics

Total sequence length3,933,954
Total ungapped length3,933,944
Gaps between scaffolds0
Number of scaffolds17
Scaffold N501,042,075
Scaffold L502
Number of contigs18
Contig N501,042,075
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,933,954173,933,9441,042,07510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halorussus halobiusHalorussus halobius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003382685.1Halorussus litoreustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.1141.7542.79

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected