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ASM475886v1

Organism name:
Acinetobacter baumannii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CIAT758
BioSample:
SAMN11298775
BioProject:
PRJNA530138
Submitter:
Christian Medical College
Date:
2019/04/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_004758865.1 (latest)
RefSeq assembly accession:
GCF_004758865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.7; Unicycler hybrid v. 0.4.6
Expected final version:
yes
Genome coverage:
56.0x
Sequencing technology:
Oxford Nanopore MiniION; IonTorrent

IDs: 2552021 [UID] 9246348 [GenBank] 9266608 [RefSeq]

See Genome Information for Acinetobacter baumannii

There are 26774 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/04/2024 23:22:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,135
CDSs (total)::4,039
Genes (coding)::3,804
CDSs (with protein)::3,804
Genes (RNA)::96
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::74
ncRNAs::4
Pseudo Genes (total)::235
CDSs (without protein)::235
Pseudo Genes (ambiguous residues)::0 of 235
Pseudo Genes (frameshifted)::135 of 235
Pseudo Genes (incomplete)::95 of 235
Pseudo Genes (internal stop)::29 of 235
Pseudo Genes (multiple problems)::20 of 235
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,172,366
Total ungapped length4,172,366
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004758875.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP038500.1=NZ_CP038500.1
Plasmid unnamed1CP038501.1=NZ_CP038501.1
Plasmid unnamed2CP038502.1=NZ_CP038502.1
Plasmid unnamed3CP038503.1=NZ_CP038503.1

Assembly statistics

MoleculeTotal
Length
All4,172,366
Chromosome 4,017,696
Plasmid unnamed178,125
Plasmid unnamed247,417
Plasmid unnamed329,128

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter baumanniiAcinetobacter baumannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014672755.1Acinetobacter baumanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014672755.1Acinetobacter baumanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7681.9385.88
Best-match type97.7681.9385.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna